X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=clustersplitcommand.h;h=a82d02270ecc37f1c85e93c9fe51b70e29288081;hb=15b252e317fde72ce0a5de8776cb88112e0ed2b6;hp=0e32ffaea7710189859f458de4adc897362e12ef;hpb=4c302368ef34f0d897afefc7853edf86fb45b9f3;p=mothur.git

diff --git a/clustersplitcommand.h b/clustersplitcommand.h
index 0e32ffa..a82d022 100644
--- a/clustersplitcommand.h
+++ b/clustersplitcommand.h
@@ -23,6 +23,7 @@
 #include "readmatrix.hpp"
 #include "inputdata.h"
 #include "clustercommand.h"
+#include "clusterclassic.h"
 
 class ClusterSplitCommand : public Command {
 	
@@ -48,13 +49,15 @@ private:
 	string method, fileroot, tag, outputDir, phylipfile, columnfile, namefile, distfile, format, showabund, timing, splitmethod, taxFile, fastafile;
 	double cutoff, splitcutoff;
 	int precision, length, processors, taxLevelCutoff;
-	bool print_start, abort, hard, large;
+	bool print_start, abort, hard, large, classic;
 	time_t start;
 	ofstream outList, outRabund, outSabund;
 	
 	void printData(ListVector*);
 	vector<string> createProcesses(vector< map<string, string> >, set<string>&);
 	vector<string> cluster(vector< map<string, string> >, set<string>&);
+    string clusterFile(string, string, set<string>&, double&);
+    string clusterClassicFile(string, string, set<string>&, double&);
 	int mergeLists(vector<string>, map<float, int>, ListVector*);
 	map<float, int> completeListFile(vector<string>, string, set<string>&, ListVector*&);
 	int createMergedDistanceFile(vector< map<string, string> >);