X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=clusterfragmentscommand.cpp;h=f17c11e7384330c4b9eb4d5af86f734fc0d0f21f;hb=bd27c2b0612942815b7417c79f7ee41f669a2a34;hp=1b8cc71706710a3c80d53f6ff2fd877d07d98103;hpb=c48d91112209b841444923670dca5454da0e2a4d;p=mothur.git

diff --git a/clusterfragmentscommand.cpp b/clusterfragmentscommand.cpp
index 1b8cc71..f17c11e 100644
--- a/clusterfragmentscommand.cpp
+++ b/clusterfragmentscommand.cpp
@@ -181,7 +181,7 @@ ClusterFragmentsCommand::ClusterFragmentsCommand(string option) {
             countfile = validParameter.validFile(parameters, "count", true);
 			if (countfile == "not open") { abort = true; countfile = ""; }	
 			else if (countfile == "not found") { countfile = ""; }
-			else { ct.readTable(countfile); m->setCountTableFile(countfile); }
+			else { ct.readTable(countfile, false); m->setCountTableFile(countfile); }
 			
             if ((countfile != "") && (namefile != "")) { m->mothurOut("When executing a cluster.fragments command you must enter ONLY ONE of the following: count or name."); m->mothurOutEndLine(); abort = true; }