X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=clusterfragmentscommand.cpp;h=9c1408c9a112dcc3ad9ed579026e2528c334a102;hb=a0f1fca79d2ddfa7ad36b4485039c68b5704fe8d;hp=f17c11e7384330c4b9eb4d5af86f734fc0d0f21f;hpb=af0a94ea8f02421b2b73e77e68753a2b4c37768e;p=mothur.git

diff --git a/clusterfragmentscommand.cpp b/clusterfragmentscommand.cpp
index f17c11e..9c1408c 100644
--- a/clusterfragmentscommand.cpp
+++ b/clusterfragmentscommand.cpp
@@ -181,7 +181,7 @@ ClusterFragmentsCommand::ClusterFragmentsCommand(string option) {
             countfile = validParameter.validFile(parameters, "count", true);
 			if (countfile == "not open") { abort = true; countfile = ""; }	
 			else if (countfile == "not found") { countfile = ""; }
-			else { ct.readTable(countfile, false); m->setCountTableFile(countfile); }
+			else { ct.readTable(countfile, true); m->setCountTableFile(countfile); }
 			
             if ((countfile != "") && (namefile != "")) { m->mothurOut("When executing a cluster.fragments command you must enter ONLY ONE of the following: count or name."); m->mothurOutEndLine(); abort = true; }