X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=clusterfragmentscommand.cpp;h=9c1408c9a112dcc3ad9ed579026e2528c334a102;hb=a0f1fca79d2ddfa7ad36b4485039c68b5704fe8d;hp=1b8cc71706710a3c80d53f6ff2fd877d07d98103;hpb=c48d91112209b841444923670dca5454da0e2a4d;p=mothur.git

diff --git a/clusterfragmentscommand.cpp b/clusterfragmentscommand.cpp
index 1b8cc71..9c1408c 100644
--- a/clusterfragmentscommand.cpp
+++ b/clusterfragmentscommand.cpp
@@ -181,7 +181,7 @@ ClusterFragmentsCommand::ClusterFragmentsCommand(string option) {
             countfile = validParameter.validFile(parameters, "count", true);
 			if (countfile == "not open") { abort = true; countfile = ""; }	
 			else if (countfile == "not found") { countfile = ""; }
-			else { ct.readTable(countfile); m->setCountTableFile(countfile); }
+			else { ct.readTable(countfile, true); m->setCountTableFile(countfile); }
 			
             if ((countfile != "") && (namefile != "")) { m->mothurOut("When executing a cluster.fragments command you must enter ONLY ONE of the following: count or name."); m->mothurOutEndLine(); abort = true; }