X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=clusterfragmentscommand.cpp;h=4b5c67f8f69bb51160d3d32212cf337719e3b4eb;hb=f3e0de2c55da5c524abb3b404f77cb84aa1ddd34;hp=9c1408c9a112dcc3ad9ed579026e2528c334a102;hpb=d39c47623faf0dc1e271f3d50efa6b029b622b88;p=mothur.git

diff --git a/clusterfragmentscommand.cpp b/clusterfragmentscommand.cpp
index 9c1408c..4b5c67f 100644
--- a/clusterfragmentscommand.cpp
+++ b/clusterfragmentscommand.cpp
@@ -181,7 +181,7 @@ ClusterFragmentsCommand::ClusterFragmentsCommand(string option) {
             countfile = validParameter.validFile(parameters, "count", true);
 			if (countfile == "not open") { abort = true; countfile = ""; }	
 			else if (countfile == "not found") { countfile = ""; }
-			else { ct.readTable(countfile, true); m->setCountTableFile(countfile); }
+			else { ct.readTable(countfile, true, false); m->setCountTableFile(countfile); }
 			
             if ((countfile != "") && (namefile != "")) { m->mothurOut("When executing a cluster.fragments command you must enter ONLY ONE of the following: count or name."); m->mothurOutEndLine(); abort = true; }