X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=clusterdoturcommand.h;h=ccfe03bb74c42d43921f8a8224c210bc7a3a7ab0;hb=1a968f34ae2d2680eaf189a197d1a21b8dfd6c03;hp=0f8657c6236baf9554a136b464118d9104b6dc93;hpb=529ec122f7cac4af987e121d150b878d7c7a0d5d;p=mothur.git

diff --git a/clusterdoturcommand.h b/clusterdoturcommand.h
index 0f8657c..ccfe03b 100644
--- a/clusterdoturcommand.h
+++ b/clusterdoturcommand.h
@@ -27,9 +27,10 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "cluster.classic";		}
 	string getCommandCategory()		{ return "Clustering";			}
-    string getOutputFileNameTag(string, string);
-	string getHelpString();		
-	string getCitation() { return "Schloss PD, Handelsman J (2005). Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl Environ Microbiol 71: 1501-6. \nhttp://www.mothur.org/wiki/Cluster.classic"; }
+    
+	string getHelpString();	
+    string getOutputPattern(string);		
+	string getCitation() { return "Schloss PD, Westcott SL (2011). Assessing and improving methods used in OTU-based approaches for 16S rRNA gene sequence analysis. Appl Environ Microbiol 77:3219.\nSchloss PD, Handelsman J (2005). Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl Environ Microbiol 71: 1501-6.\nhttp://www.mothur.org/wiki/Cluster.classic\n";}
 	string getDescription()		{ return "cluster your sequences into OTUs using DOTUR’s method"; }
 	
 	int execute();