X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=clusterdoturcommand.h;h=0f8657c6236baf9554a136b464118d9104b6dc93;hb=dc383fb61b6d165a8d36e6108df8bc7129243ae6;hp=e76332cbd9f7c82afed60ddfc48f84c0489798bb;hpb=e150b0b0664caec517485ee6d69dcdade6dcae77;p=mothur.git

diff --git a/clusterdoturcommand.h b/clusterdoturcommand.h
index e76332c..0f8657c 100644
--- a/clusterdoturcommand.h
+++ b/clusterdoturcommand.h
@@ -27,15 +27,17 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "cluster.classic";		}
 	string getCommandCategory()		{ return "Clustering";			}
-	string getHelpString();	
-	string getCitation() { return "http://www.mothur.org/wiki/Cluster.classic"; }
+    string getOutputFileNameTag(string, string);
+	string getHelpString();		
+	string getCitation() { return "Schloss PD, Handelsman J (2005). Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl Environ Microbiol 71: 1501-6. \nhttp://www.mothur.org/wiki/Cluster.classic"; }
+	string getDescription()		{ return "cluster your sequences into OTUs using DOTUR’s method"; }
 	
 	int execute(); 
 	void help() { m->mothurOut(getHelpString()); }	
 	
 private:
 	bool abort, hard, sim;
-	string method, fileroot, tag, outputDir, phylipfile, namefile;
+	string method, fileroot, tag, outputDir, phylipfile, namefile, countfile;
 	double cutoff;
 	int precision, length;
 	ofstream sabundFile, rabundFile, listFile;