X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=clustercommand.h;h=c8e01749de20baac9fe523e9cbf0b5f158b35941;hb=c5f38b0c83719306fd2e5a7a83e04988b1853f62;hp=44ce6f9f6833a8fd5181bcff64880bfe8f4d4f88;hpb=cd37904452dc95b183ff313ff05720c562902487;p=mothur.git

diff --git a/clustercommand.h b/clustercommand.h
index 44ce6f9..c8e0174 100644
--- a/clustercommand.h
+++ b/clustercommand.h
@@ -26,12 +26,10 @@
 	The cluster() command outputs three files *.list, *.rabund, and *.sabund.   */
 
 
-class GlobalData;
-
 class ClusterCommand : public Command {
 	
 public:
-	ClusterCommand(string);	
+	ClusterCommand(string);
 	~ClusterCommand();
 	int execute();	
 	void help();
@@ -45,14 +43,20 @@ private:
 	RAbundVector oldRAbund;
 	ListVector oldList;
 
-	bool abort;
+	bool abort, hard;
 
-	string method, fileroot, tag;
+	string method, fileroot, tag, outputDir;
 	double cutoff;
+	string showabund, timing;
 	int precision, length;
 	ofstream sabundFile, rabundFile, listFile;
+
+	bool print_start;
+	time_t start;
+	unsigned long loops;
 	
 	void printData(string label);
+	vector<string> outputNames;
 };
 
 #endif