X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=clustercommand.cpp;h=e4e2d2104e3af44829990b01cef6782147359b98;hb=a218321731df14d231bbc08e79906f757cf1540d;hp=d14af108d69c36f98617fc2e133c3dcfb537c553;hpb=818dcf9513122fa52616a7722f4893f77685a621;p=mothur.git

diff --git a/clustercommand.cpp b/clustercommand.cpp
index d14af10..e4e2d21 100644
--- a/clustercommand.cpp
+++ b/clustercommand.cpp
@@ -146,6 +146,7 @@ int ClusterCommand::execute(){
 		print_start = true;
 		start = time(NULL);
 		loops = 0;
+		double saveCutoff = cutoff;
 		
 		while (matrix->getSmallDist() < cutoff && matrix->getNNodes() > 0){
 			if (print_start && isTrue(timing)) {
@@ -204,9 +205,14 @@ int ClusterCommand::execute(){
 		sabundFile.close();
 		rabundFile.close();
 		listFile.close();
+		
+		if (saveCutoff != cutoff) { mothurOut("changed cutoff to " + toString(cutoff)); mothurOutEndLine();  }
+		
 		//if (isTrue(timing)) {
 			mothurOut("It took " + toString(time(NULL) - estart) + " seconds to cluster"); mothurOutEndLine();
 		//}
+		
+		
 		return 0;
 	}
 	catch(exception& e) {