X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=cluster.hpp;fp=cluster.hpp;h=a6024e79d45a52274040a53cca4f8b32d9d2e998;hb=c82900be3ceed3d9bc491bdc98b1819ef85c1af7;hp=99d8b7d557a41cef684ad2f9aae7d636d621bbc7;hpb=a5afca18544555fba2d9c3670ad1f8574916b0a0;p=mothur.git

diff --git a/cluster.hpp b/cluster.hpp
index 99d8b7d..a6024e7 100644
--- a/cluster.hpp
+++ b/cluster.hpp
@@ -14,8 +14,10 @@ class Cluster {
 	
 public:
 	Cluster(RAbundVector*, ListVector*, SparseMatrix*);
-    virtual void update();
+    virtual void update();				
 	virtual string getTag() = 0;
+	virtual void setMapWanted(bool m);  
+	virtual map<string, int> getSeqtoBin()  {  return seq2Bin;	}
 
 protected:	
 	void getRowColCells();
@@ -25,6 +27,7 @@ protected:
 
 	virtual void clusterBins();
 	virtual void clusterNames();
+	virtual void updateMap();
 	
 	RAbundVector* rabund;
 	ListVector* list;
@@ -33,8 +36,10 @@ protected:
 	int smallRow;
 	int smallCol;
 	float smallDist;
+	bool mapWanted;
+	map<string, int> seq2Bin;
 	
-	vector<MatVec> seqVec;		// contains vectors of cells related to a certain sequence
+	vector<MatVec> seqVec;		// contains vectors of cells related to a certain sequence
 	MatVec rowCells;
 	MatVec colCells;
 	ull nRowCells;