X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=cluster.cpp;h=c6a9ca4059b0fafb4dc2529ccf12bf3f134eb69e;hb=a218321731df14d231bbc08e79906f757cf1540d;hp=e360624dbfc599f94901fe12c1518fe8c11e877d;hpb=818dcf9513122fa52616a7722f4893f77685a621;p=mothur.git

diff --git a/cluster.cpp b/cluster.cpp
index e360624..c6a9ca4 100644
--- a/cluster.cpp
+++ b/cluster.cpp
@@ -213,8 +213,11 @@ void Cluster::update(double& cutOFF){
 				}
 				//if not merged it you need it for warning 
 				if ((!merged) && (method == "average")) {  
-					mothurOut("Warning: trying to merge cell " + toString(rowCells[i]->row+1) + " " + toString(rowCells[i]->column+1) + " distance " + toString(rowCells[i]->dist) + " with value above cutoff. Results may vary from using cutoff at cluster command instead of read.dist."); mothurOutEndLine(); 
-					if (cutOFF > rowCells[i]->dist) {  cutOFF = rowCells[i]->dist;  mothurOut("changing cutoff to " + toString(cutOFF));  mothurOutEndLine(); }
+					//mothurOut("Warning: trying to merge cell " + toString(rowCells[i]->row+1) + " " + toString(rowCells[i]->column+1) + " distance " + toString(rowCells[i]->dist) + " with value above cutoff. Results may vary from using cutoff at cluster command instead of read.dist."); mothurOutEndLine(); 
+					if (cutOFF > rowCells[i]->dist) {  
+						cutOFF = rowCells[i]->dist;  
+						//mothurOut("changing cutoff to " + toString(cutOFF));  mothurOutEndLine(); 
+					}
 
 				}
 				removeCell(rowCells[i], i , -1);  
@@ -230,8 +233,11 @@ void Cluster::update(double& cutOFF){
 			if (foundCol[i] == 0) {
 				if (method == "average") {
 					if (!((colCells[i]->row == smallRow) && (colCells[i]->column == smallCol))) {
-						mothurOut("Warning: merging cell " + toString(colCells[i]->row+1) + " " + toString(colCells[i]->column+1) + " distance " + toString(colCells[i]->dist) + " value above cutoff. Results may vary from using cutoff at cluster command instead of read.dist."); mothurOutEndLine();
-						if (cutOFF > colCells[i]->dist) {  cutOFF = colCells[i]->dist;  mothurOut("changing cutoff to " + toString(cutOFF));  mothurOutEndLine(); }
+						//mothurOut("Warning: merging cell " + toString(colCells[i]->row+1) + " " + toString(colCells[i]->column+1) + " distance " + toString(colCells[i]->dist) + " value above cutoff. Results may vary from using cutoff at cluster command instead of read.dist."); mothurOutEndLine();
+						if (cutOFF > colCells[i]->dist) {  
+							cutOFF = colCells[i]->dist;  
+							//mothurOut("changing cutoff to " + toString(cutOFF));  mothurOutEndLine(); 
+						}
 					}
 				}
 				removeCell(colCells[i], -1, i);