X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=cluster.cpp;h=ac9f4482da12110796c54f15c4137681a3d29038;hb=d205e70ae86dbee2efc2df02f2717975854de6ba;hp=d0a83cfd0f4a7ccd5c73c8ea8966a8e3d49fc03c;hpb=14bf280629e8e52ff1ea3c9da6f7aae1e28f9acb;p=mothur.git

diff --git a/cluster.cpp b/cluster.cpp
index d0a83cf..ac9f448 100644
--- a/cluster.cpp
+++ b/cluster.cpp
@@ -53,7 +53,7 @@ rabund(rav), list(lv), dMatrix(dm), method(f)
 	// sequence in the distance matrix.
 //ofstream outtemp;
 //string temp = "temp";
-//openOutputFile(temp, outtemp);	
+//m->openOutputFile(temp, outtemp);	
 //cout << lv->size() << endl;
 	seqVec = vector<MatVec>(lv->size());
 	for (MatData currentCell = dMatrix->begin(); currentCell != dMatrix->end(); currentCell++) {
@@ -205,7 +205,6 @@ void Cluster::clusterNames(){
 void Cluster::update(double& cutOFF){
 	try {
 		getRowColCells();	
-//cout << "got rowcells" << endl;
 
 		vector<int> foundCol(nColCells, 0);
 
@@ -215,6 +214,7 @@ void Cluster::update(double& cutOFF){
 		// The vector has to be traversed in reverse order to preserve the index
 		// for faster removal in removeCell()
 		for (int i=nRowCells-1;i>=0;i--) {
+			//if you are not the smallCell
 			if (!((rowCells[i]->row == smallRow) && (rowCells[i]->column == smallCol))) {
 				if (rowCells[i]->row == smallRow) {
 					search = rowCells[i]->column;