X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=cluster.cpp;h=ac9f4482da12110796c54f15c4137681a3d29038;hb=957d67f7d8bbadfd2930de061e89fd9b149270fd;hp=a766e08d47b4af7a46d8093323cb795d57d6aa78;hpb=6e8fce385a566f51350274309503d7405e5b9f35;p=mothur.git

diff --git a/cluster.cpp b/cluster.cpp
index a766e08..ac9f448 100644
--- a/cluster.cpp
+++ b/cluster.cpp
@@ -53,7 +53,7 @@ rabund(rav), list(lv), dMatrix(dm), method(f)
 	// sequence in the distance matrix.
 //ofstream outtemp;
 //string temp = "temp";
-//openOutputFile(temp, outtemp);	
+//m->openOutputFile(temp, outtemp);	
 //cout << lv->size() << endl;
 	seqVec = vector<MatVec>(lv->size());
 	for (MatData currentCell = dMatrix->begin(); currentCell != dMatrix->end(); currentCell++) {
@@ -214,6 +214,7 @@ void Cluster::update(double& cutOFF){
 		// The vector has to be traversed in reverse order to preserve the index
 		// for faster removal in removeCell()
 		for (int i=nRowCells-1;i>=0;i--) {
+			//if you are not the smallCell
 			if (!((rowCells[i]->row == smallRow) && (rowCells[i]->column == smallCol))) {
 				if (rowCells[i]->row == smallRow) {
 					search = rowCells[i]->column;