X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=clearcutcommand.h;h=d6c0a57d9628a124c3bc900d6865f0ed4e7cc606;hb=4a2d841cb97fb02351022efe9d7068b1dc212bf9;hp=b3ac28e03a293df1acb1f946fcec755294d0ecf5;hpb=5a86e9e5a5a9e061e17b3ae64fb8881f14e53b8a;p=mothur.git

diff --git a/clearcutcommand.h b/clearcutcommand.h
index b3ac28e..d6c0a57 100644
--- a/clearcutcommand.h
+++ b/clearcutcommand.h
@@ -11,7 +11,7 @@
  */
 
 #include "command.hpp"
-
+#include "globaldata.hpp"
 
 /* 
   Evans, J., L. Sheneman, and J.A. Foster (2006) Relaxed Neighbor-Joining: 
@@ -31,7 +31,7 @@ public:
 	
 private:
 	string outputDir, phylipfile, fastafile, matrixout, inputFile, seed, ntrees;
-	bool version, verbose, quiet, norandom, shuffle, neighbor, expblen, expdist, stdout, kimura, jukes, protein, DNA, stdin;
+	bool version, verbose, quiet, norandom, shuffle, neighbor, expblen, expdist, stdoutWanted, kimura, jukes, protein, DNA, stdinWanted;
 	bool abort;
 };