X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=classifytreecommand.h;h=758a438dc068f0790aab0b8b309f32a0fb6f24a5;hb=f509429e06e545bde69c97cacc0eb436775bd329;hp=bd0e1ce4f084ccefae3fd8c088322dca1dc214b5;hpb=d6c0a11d1cecfac18b323285e7ffadb7f58e848f;p=mothur.git

diff --git a/classifytreecommand.h b/classifytreecommand.h
index bd0e1ce..758a438 100644
--- a/classifytreecommand.h
+++ b/classifytreecommand.h
@@ -22,16 +22,15 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "classify.tree";				}
 	string getCommandCategory()		{ return "Phylotype Analysis";          }
+	string getOutputFileNameTag(string, string);
 	string getHelpString();	
 	string getCitation() { return "http://www.mothur.org/wiki/Classify.tree"; }
-	string getDescription()		{ return "Find the concensus taxonomy for the descendant of each tree node"; }
+	string getDescription()		{ return "Find the consensus taxonomy for the descendant of each tree node"; }
     
 	int execute();
 	void help() { m->mothurOut(getHelpString()); }	
 	
 private:
-	ReadTree* read;
-    TreeMap* tmap;
 	string treefile, taxonomyfile, groupfile, namefile, outputDir;
 	bool abort;
 	vector<string> outputNames;
@@ -43,8 +42,6 @@ private:
 	int getClassifications(Tree*&);
 	map<string, set<string> > getDescendantList(Tree*&, int, map<int, map<string, set<string> > >);
     string getTaxonomy(set<string>, int&);
-    int readNamesFile(); 
-    int readTaxonomyFile();
 	
 };