X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=classifytreecommand.h;h=758a438dc068f0790aab0b8b309f32a0fb6f24a5;hb=f320651dfb5359e6bba597280753553de28a2154;hp=026e4bae414d227dab7750d623999b86d4aa4a73;hpb=91a27e0483827c06c21c4fe89558923bbfe86573;p=mothur.git

diff --git a/classifytreecommand.h b/classifytreecommand.h
index 026e4ba..758a438 100644
--- a/classifytreecommand.h
+++ b/classifytreecommand.h
@@ -22,6 +22,7 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "classify.tree";				}
 	string getCommandCategory()		{ return "Phylotype Analysis";          }
+	string getOutputFileNameTag(string, string);
 	string getHelpString();	
 	string getCitation() { return "http://www.mothur.org/wiki/Classify.tree"; }
 	string getDescription()		{ return "Find the consensus taxonomy for the descendant of each tree node"; }
@@ -30,8 +31,6 @@ public:
 	void help() { m->mothurOut(getHelpString()); }	
 	
 private:
-	ReadTree* read;
-    TreeMap* tmap;
 	string treefile, taxonomyfile, groupfile, namefile, outputDir;
 	bool abort;
 	vector<string> outputNames;
@@ -43,8 +42,6 @@ private:
 	int getClassifications(Tree*&);
 	map<string, set<string> > getDescendantList(Tree*&, int, map<int, map<string, set<string> > >);
     string getTaxonomy(set<string>, int&);
-    int readNamesFile(); 
-    int readTaxonomyFile();
 	
 };