X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=classifytreecommand.h;fp=classifytreecommand.h;h=dd972b61b457378462392f771d759585bef53188;hb=6c2b1e530a5c0bb87040e58a3e410097acdfcc3d;hp=758a438dc068f0790aab0b8b309f32a0fb6f24a5;hpb=f509429e06e545bde69c97cacc0eb436775bd329;p=mothur.git

diff --git a/classifytreecommand.h b/classifytreecommand.h
index 758a438..dd972b6 100644
--- a/classifytreecommand.h
+++ b/classifytreecommand.h
@@ -12,6 +12,7 @@
 #include "command.hpp"
 #include "readtree.h"
 #include "treemap.h"
+#include "counttable.h"
 
 class ClassifyTreeCommand : public Command {
 public:
@@ -31,13 +32,14 @@ public:
 	void help() { m->mothurOut(getHelpString()); }	
 	
 private:
-	string treefile, taxonomyfile, groupfile, namefile, outputDir;
+	string treefile, taxonomyfile, groupfile, namefile, countfile, outputDir;
 	bool abort;
 	vector<string> outputNames;
     int numUniquesInName, cutoff;
     map<string, string> nameMap;
     map<string, int> nameCount;
     map<string, string> taxMap;
+    CountTable* ct;
 	
 	int getClassifications(Tree*&);
 	map<string, set<string> > getDescendantList(Tree*&, int, map<int, map<string, set<string> > >);