X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=classifysharedcommand.h;h=7a6907f47cc2030d9cab822db6c34b95c72e1504;hb=a0f1fca79d2ddfa7ad36b4485039c68b5704fe8d;hp=93c62867d48069e7374bf955cfe695c1762227be;hpb=90708fe9701e3827e477c82fb3652539c3bf2a0d;p=mothur.git

diff --git a/classifysharedcommand.h b/classifysharedcommand.h
index 93c6286..7a6907f 100755
--- a/classifysharedcommand.h
+++ b/classifysharedcommand.h
@@ -20,11 +20,11 @@ public:
   
   vector<string> setParameters();
   string getCommandName()			{ return "classify.shared";     }
-   string getCommandCategory()		{ return "OTU-Based Approaches";		}
-  string getOutputFileNameTag(string, string);
-  string getHelpString();
+  string getCommandCategory()		{ return "OTU-Based Approaches";		}  
+  string getHelpString();	
+  string getOutputPattern(string);
   string getCitation() { return "http://www.mothur.org/wiki/Classify.shared\n"; }
-  string getDescription()		{ return "description"; }
+  string getDescription()		{ return "implements the random forest machine learning algorithm to identify OTUs that can be used to differentiate between various groups of samples"; }
   int execute();
   
   void help() { m->mothurOut(getHelpString()); }
@@ -34,7 +34,7 @@ private:
     string outputDir;
     vector<string> outputNames, Groups;
   
-    string sharedfile, designfile, otupersplit, splitcriteria;
+    string sharedfile, designfile;
     set<string> labels;
     bool allLines;