X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=classifysharedcommand.h;h=7a6907f47cc2030d9cab822db6c34b95c72e1504;hb=541bab1dac00688b4c3a8c4a95ab464412663c50;hp=fe0637494db78aa96ecbac56c2f82b08ba2f9c6d;hpb=1a5c2356c1b955c6ec024b2baf9f46377ee7c72e;p=mothur.git

diff --git a/classifysharedcommand.h b/classifysharedcommand.h
index fe06374..7a6907f 100755
--- a/classifysharedcommand.h
+++ b/classifysharedcommand.h
@@ -20,12 +20,11 @@ public:
   
   vector<string> setParameters();
   string getCommandName()			{ return "classify.shared";     }
-   string getCommandCategory()		{ return "OTU-Based Approaches";		}
-  
+  string getCommandCategory()		{ return "OTU-Based Approaches";		}  
   string getHelpString();	
-    string getOutputPattern(string);
+  string getOutputPattern(string);
   string getCitation() { return "http://www.mothur.org/wiki/Classify.shared\n"; }
-  string getDescription()		{ return "description"; }
+  string getDescription()		{ return "implements the random forest machine learning algorithm to identify OTUs that can be used to differentiate between various groups of samples"; }
   int execute();
   
   void help() { m->mothurOut(getHelpString()); }
@@ -35,7 +34,7 @@ private:
     string outputDir;
     vector<string> outputNames, Groups;
   
-    string sharedfile, designfile, otupersplit, splitcriteria;
+    string sharedfile, designfile;
     set<string> labels;
     bool allLines;