X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=classifysharedcommand.cpp;h=c79e0e8f2aefcc39c7358fd7040681a8e0e7f924;hb=3914b0d6480f67df53b1e838f51c4e6155710434;hp=d9864b94e6eb43f0cba337175907edc65db63271;hpb=c2f279a697c7267b5d91882087ab91f7e6653aa2;p=mothur.git diff --git a/classifysharedcommand.cpp b/classifysharedcommand.cpp index d9864b9..c79e0e8 100755 --- a/classifysharedcommand.cpp +++ b/classifysharedcommand.cpp @@ -22,9 +22,9 @@ vector ClassifySharedCommand::setParameters(){ CommandParameter pnumtrees("numtrees", "Number", "", "100", "", "", "","",false,false); parameters.push_back(pnumtrees); // parameters related to pruning - CommandParameter pdopruning("prune", "Boolean", "", "F", "", "", "", "", false, false); parameters.push_back(pdopruning); + CommandParameter pdopruning("prune", "Boolean", "", "T", "", "", "", "", false, false); parameters.push_back(pdopruning); CommandParameter ppruneaggrns("pruneaggressiveness", "Number", "", "0.9", "", "", "", "", false, false); parameters.push_back(ppruneaggrns); - CommandParameter pdiscardhetrees("discarderrortrees", "Boolean", "", "F", "", "", "", "", false, false); parameters.push_back(pdiscardhetrees); + CommandParameter pdiscardhetrees("discarderrortrees", "Boolean", "", "T", "", "", "", "", false, false); parameters.push_back(pdiscardhetrees); CommandParameter phetdiscardthreshold("errorthreshold", "Number", "", "0.4", "", "", "", "", false, false); parameters.push_back(phetdiscardthreshold); CommandParameter psdthreshold("stdthreshold", "Number", "", "0.0", "", "", "", "", false, false); parameters.push_back(psdthreshold); // pruning params end @@ -375,9 +375,10 @@ void ClassifySharedCommand::processSharedAndDesignData(vector variables; - variables["[filename]"] = outputDir + m->getRootName(m->getSimpleName(sharedfile)); + variables["[filename]"] = outputDir + m->getRootName(m->getSimpleName(sharedfile)) + "RF."; variables["[distance]"] = lookup[0]->getLabel(); string filename = getOutputFileName("summary", variables); outputNames.push_back(filename); outputTypes["summary"].push_back(filename);