X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=classifysharedcommand.cpp;h=c79e0e8f2aefcc39c7358fd7040681a8e0e7f924;hb=3914b0d6480f67df53b1e838f51c4e6155710434;hp=6e32fd1e800023348e4a58eeaad678f262430d25;hpb=ac663461b19ad1436a06aa63f97221d1ff105482;p=mothur.git

diff --git a/classifysharedcommand.cpp b/classifysharedcommand.cpp
index 6e32fd1..c79e0e8 100755
--- a/classifysharedcommand.cpp
+++ b/classifysharedcommand.cpp
@@ -375,9 +375,10 @@ void ClassifySharedCommand::processSharedAndDesignData(vector<SharedRAbundVector
         
         randomForest.populateDecisionTrees();
         randomForest.calcForrestErrorRate();
+        randomForest.printConfusionMatrix(intToTreatmentMap);
         
         map<string, string> variables; 
-        variables["[filename]"] = outputDir + m->getRootName(m->getSimpleName(sharedfile));
+        variables["[filename]"] = outputDir + m->getRootName(m->getSimpleName(sharedfile)) + "RF.";
         variables["[distance]"] = lookup[0]->getLabel();
         string filename = getOutputFileName("summary", variables);
         outputNames.push_back(filename); outputTypes["summary"].push_back(filename);