X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=classifysharedcommand.cpp;h=c79e0e8f2aefcc39c7358fd7040681a8e0e7f924;hb=3914b0d6480f67df53b1e838f51c4e6155710434;hp=482a3eb7969007ba592c5e061c455be24d0cae55;hpb=3503ee51ce297cd232ee0a98ace045358a2dc10f;p=mothur.git

diff --git a/classifysharedcommand.cpp b/classifysharedcommand.cpp
index 482a3eb..c79e0e8 100755
--- a/classifysharedcommand.cpp
+++ b/classifysharedcommand.cpp
@@ -375,10 +375,10 @@ void ClassifySharedCommand::processSharedAndDesignData(vector<SharedRAbundVector
         
         randomForest.populateDecisionTrees();
         randomForest.calcForrestErrorRate();
-        //randomForest.printConfusionMatrix(intToTreatmentMap);
+        randomForest.printConfusionMatrix(intToTreatmentMap);
         
         map<string, string> variables; 
-        variables["[filename]"] = outputDir + m->getRootName(m->getSimpleName(sharedfile)) + ".RF.";
+        variables["[filename]"] = outputDir + m->getRootName(m->getSimpleName(sharedfile)) + "RF.";
         variables["[distance]"] = lookup[0]->getLabel();
         string filename = getOutputFileName("summary", variables);
         outputNames.push_back(filename); outputTypes["summary"].push_back(filename);