X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=classifyseqscommand.h;h=f0c67ba3d1ff812cef4026c43a81503b9379eec4;hb=fc3b1fc4fc1c4e38fde6b0c0ee7896b5fe0b9d57;hp=0bf4a9154412080d28fa065ab33789279832fbeb;hpb=16abd6271c455bd01b34ff89a2e3641bef0fa128;p=mothur.git diff --git a/classifyseqscommand.h b/classifyseqscommand.h index 0bf4a91..f0c67ba 100644 --- a/classifyseqscommand.h +++ b/classifyseqscommand.h @@ -163,7 +163,7 @@ static DWORD WINAPI MyClassThreadFunction(LPVOID lpParam){ //make classify Classify* myclassify; if(pDataArray->method == "bayesian"){ myclassify = new Bayesian(pDataArray->taxonomyFileName, pDataArray->templateFileName, pDataArray->search, pDataArray->kmerSize, pDataArray->cutoff, pDataArray->iters, pDataArray->threadID, pDataArray->flip); } - else if(pDataArray->method == "knn"){ myclassify = new Knn(pDataArray->taxonomyFileName, pDataArray->templateFileName, pDataArray->search, pDataArray->kmerSize, pDataArray->gapOpen, pDataArray->gapExtend, pDataArray->match, pDataArray->misMatch, pDataArray->numWanted, pDataArray->threadID, pDataArray->flipThreshold); } + else if(pDataArray->method == "knn"){ myclassify = new Knn(pDataArray->taxonomyFileName, pDataArray->templateFileName, pDataArray->search, pDataArray->kmerSize, pDataArray->gapOpen, pDataArray->gapExtend, pDataArray->match, pDataArray->misMatch, pDataArray->numWanted, pDataArray->threadID); } else { pDataArray->m->mothurOut(pDataArray->search + " is not a valid method option. I will run the command using bayesian."); pDataArray->m->mothurOutEndLine();