X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=classifyseqscommand.cpp;h=1b56433073d404e2c7f33513f7362f8306afcb42;hb=250e3b11b1c9c1e1ad458ab6c7e71ac2e67e11d9;hp=edbd4c466bfa500bcaa72b1f8266f3dd40185ae9;hpb=c48d91112209b841444923670dca5454da0e2a4d;p=mothur.git

diff --git a/classifyseqscommand.cpp b/classifyseqscommand.cpp
index edbd4c4..1b56433 100644
--- a/classifyseqscommand.cpp
+++ b/classifyseqscommand.cpp
@@ -812,7 +812,7 @@ int ClassifySeqsCommand::execute(){
                 PhyloSummary* taxaSum;
                 if (hasCount) { 
                     ct = new CountTable();
-                    ct->readTable(countfileNames[s]);
+                    ct->readTable(countfileNames[s], true, false);
                     taxaSum = new PhyloSummary(taxonomyFileName, ct);
                     taxaSum->summarize(tempTaxonomyFile);
                 }else {