X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=classifyseqscommand.cpp;fp=classifyseqscommand.cpp;h=7f262bf9019de7e26d611e9d8b6c37c9f47e7cc6;hb=a9dbc22713bfc056a797361dd757b1a5c98e1c01;hp=36bccc2b205635c6b1b0df872332534d615e3bb1;hpb=e10c72304ee071c0c40e0218a06d89dc4731cbc2;p=mothur.git

diff --git a/classifyseqscommand.cpp b/classifyseqscommand.cpp
index 36bccc2..7f262bf 100644
--- a/classifyseqscommand.cpp
+++ b/classifyseqscommand.cpp
@@ -658,7 +658,6 @@ int ClassifySeqsCommand::execute(){
 			}
 			
 			outputNames.push_back(newTaxonomyFile); outputTypes["taxonomy"].push_back(newTaxonomyFile);
-			outputNames.push_back(newaccnosFile); outputTypes["accnos"].push_back(newaccnosFile);
 			outputNames.push_back(taxSummary);	outputTypes["taxsummary"].push_back(taxSummary);
 			
 			int start = time(NULL);
@@ -782,7 +781,9 @@ int ClassifySeqsCommand::execute(){
 			}
 #endif
 			
-			if (!m->isBlank(newaccnosFile)) { m->mothurOutEndLine(); m->mothurOut("[WARNING]: mothur suspects some of your sequences may be reversed, please check " + newaccnosFile + " for the list of the sequences."); m->mothurOutEndLine(); }
+			if (!m->isBlank(newaccnosFile)) { m->mothurOutEndLine(); m->mothurOut("[WARNING]: mothur suspects some of your sequences may be reversed, please check " + newaccnosFile + " for the list of the sequences."); m->mothurOutEndLine(); 
+                outputNames.push_back(newaccnosFile); outputTypes["accnos"].push_back(newaccnosFile);
+            }else { m->mothurRemove(newaccnosFile); }
 
 		m->mothurOutEndLine();
 		m->mothurOut("It took " + toString(time(NULL) - start) + " secs to classify " + toString(numFastaSeqs) + " sequences."); m->mothurOutEndLine(); m->mothurOutEndLine();
@@ -895,12 +896,12 @@ int ClassifySeqsCommand::execute(){
 			#ifdef USE_MPI	
 				}
 			#endif
-
-			m->mothurOutEndLine();
-			m->mothurOut("Output File Names: "); m->mothurOutEndLine();
-			for (int i = 0; i < outputNames.size(); i++) {	m->mothurOut(outputNames[i]); m->mothurOutEndLine();	}
-			m->mothurOutEndLine();
 		}
+        
+        m->mothurOutEndLine();
+        m->mothurOut("Output File Names: "); m->mothurOutEndLine();
+        for (int i = 0; i < outputNames.size(); i++) {	m->mothurOut(outputNames[i]); m->mothurOutEndLine();	}
+        m->mothurOutEndLine();
 		
 		//set taxonomy file as new current taxonomyfile
 		string current = "";