X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=classifyseqscommand.cpp;fp=classifyseqscommand.cpp;h=1b56433073d404e2c7f33513f7362f8306afcb42;hb=a935b75dd890da5ae7f09e5e6179f90ab2955348;hp=b311821b3e8d293daac13107eb9e6771be360bf0;hpb=d1c97b8c04bb75faca1e76ffad60b37a4d789d3d;p=mothur.git

diff --git a/classifyseqscommand.cpp b/classifyseqscommand.cpp
index b311821..1b56433 100644
--- a/classifyseqscommand.cpp
+++ b/classifyseqscommand.cpp
@@ -812,7 +812,7 @@ int ClassifySeqsCommand::execute(){
                 PhyloSummary* taxaSum;
                 if (hasCount) { 
                     ct = new CountTable();
-                    ct->readTable(countfileNames[s], true);
+                    ct->readTable(countfileNames[s], true, false);
                     taxaSum = new PhyloSummary(taxonomyFileName, ct);
                     taxaSum->summarize(tempTaxonomyFile);
                 }else {