X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=classifyotucommand.h;fp=classifyotucommand.h;h=2e76057f1219b8c44785a5be9b6962043bbb68af;hb=90708fe9701e3827e477c82fb3652539c3bf2a0d;hp=36a0328aa85bb2d646e14ec37b1d13f8a0581241;hpb=f320651dfb5359e6bba597280753553de28a2154;p=mothur.git

diff --git a/classifyotucommand.h b/classifyotucommand.h
index 36a0328..2e76057 100644
--- a/classifyotucommand.h
+++ b/classifyotucommand.h
@@ -13,6 +13,7 @@
 #include "command.hpp"
 #include "listvector.hpp"
 #include "inputdata.h"
+#include "counttable.h"
 
 
 class ClassifyOtuCommand : public Command {
@@ -34,10 +35,11 @@ public:
 	void help() { m->mothurOut(getHelpString()); }	
 
 private:
-
+    GroupMap* groupMap;
+    CountTable* ct;
 	ListVector* list;
 	InputData* input;
-	string listfile, namefile, taxfile, label, outputDir, refTaxonomy, groupfile, basis;
+	string listfile, namefile, taxfile, label, outputDir, refTaxonomy, groupfile, basis, countfile;
 	bool abort, allLines, probs;
 	int cutoff;
 	set<string> labels; //holds labels to be used