X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=classify.h;h=4e0354782e5063e2a52268e88a1412b40db3c28e;hb=0cefb55a2616975bd4a144fc345693695ffc9bb6;hp=bd9f34bc7eb3f51b6b360ce4b4f18251f194e155;hpb=4a2d841cb97fb02351022efe9d7068b1dc212bf9;p=mothur.git

diff --git a/classify.h b/classify.h
index bd9f34b..4e03547 100644
--- a/classify.h
+++ b/classify.h
@@ -30,7 +30,9 @@ public:
 	virtual ~Classify(){};
 	virtual string getTaxonomy(Sequence*) = 0;
 	virtual string getSimpleTax()  { return simpleTax;	}
+	virtual bool getFlipped()  { return flipped;	}
 	virtual void generateDatabaseAndNames(string, string, string, int, float, float, float, float);
+	virtual void setDistName(string s) {} //for knn, so if distance method is selected with knn you can create the smallest distance file in the right place.
 	
 protected:
 
@@ -43,6 +45,8 @@ protected:
 	
 	string taxFile, templateFile, simpleTax;
 	vector<string> names;
+	int threadID;
+	bool flip, flipped;
 	
 	int readTaxonomy(string);
 	vector<string> parseTax(string);