X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=classify.h;fp=classify.h;h=4e0354782e5063e2a52268e88a1412b40db3c28e;hb=16abd6271c455bd01b34ff89a2e3641bef0fa128;hp=2e209f562108121e8a95b3c4470252537813baed;hpb=896a4f281982a3c2889f6ce6d73be997072aceae;p=mothur.git

diff --git a/classify.h b/classify.h
index 2e209f5..4e03547 100644
--- a/classify.h
+++ b/classify.h
@@ -30,6 +30,7 @@ public:
 	virtual ~Classify(){};
 	virtual string getTaxonomy(Sequence*) = 0;
 	virtual string getSimpleTax()  { return simpleTax;	}
+	virtual bool getFlipped()  { return flipped;	}
 	virtual void generateDatabaseAndNames(string, string, string, int, float, float, float, float);
 	virtual void setDistName(string s) {} //for knn, so if distance method is selected with knn you can create the smallest distance file in the right place.
 	
@@ -45,6 +46,7 @@ protected:
 	string taxFile, templateFile, simpleTax;
 	vector<string> names;
 	int threadID;
+	bool flip, flipped;
 	
 	int readTaxonomy(string);
 	vector<string> parseTax(string);