X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=classify.cpp;h=c0f8a9c7d5115c60d46626235e82b99b625c43c1;hb=92f998cc7debc4bf3e8594848586b8153d96db16;hp=9431c6cef6adf9edff07cfb16d32826c1b3592d9;hpb=d5bf2c1354d0811a33394d918b15620606560d58;p=mothur.git

diff --git a/classify.cpp b/classify.cpp
index 9431c6c..c0f8a9c 100644
--- a/classify.cpp
+++ b/classify.cpp
@@ -14,9 +14,9 @@
 #include "blastdb.hpp"
 
 /**************************************************************************************************/
-
 Classify::Classify(string tfile, string tempFile, string method, int kmerSize, float gapOpen, float gapExtend, float match, float misMatch) : taxFile(tfile), templateFile(tempFile) {		
-	try {											
+	try {	
+											
 		readTaxonomy(taxFile);	
 		
 		int start = time(NULL);
@@ -111,10 +111,6 @@ void Classify::readTaxonomy(string file) {
 			
 			taxonomy[name] = taxInfo;
 			
-			//itTax = taxList.find(taxInfo);
-			//if (itTax == taxList.end()) { //this is new taxonomy
-				//taxList[taxInfo] = 1;
-			//}else { taxList[taxInfo]++;	}
 			phyloTree->addSeqToTree(name, taxInfo);
 		
 			gobble(inTax);