X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=classify.cpp;h=71a9b258e91bf2f527e2e1a8469f2e1e8037d76d;hb=250e3b11b1c9c1e1ad458ab6c7e71ac2e67e11d9;hp=5f97c7ec693a97997554683188a013b1054eb3d7;hpb=372fb21ea66ced432b109225851a1b80ef0491a3;p=mothur.git

diff --git a/classify.cpp b/classify.cpp
index 5f97c7e..71a9b25 100644
--- a/classify.cpp
+++ b/classify.cpp
@@ -295,12 +295,13 @@ int Classify::readTaxonomy(string file) {
 			iss >> name; m->gobble(iss);
             iss >> taxInfo;
             if (m->debug) { m->mothurOut("[DEBUG]: name = " + name + " tax = " + taxInfo + "\n"); }
-			if (m->inUsersGroups(name, names)) {
+            //commented out to save time with large templates. 10/7/13
+			//if (m->inUsersGroups(name, names)) {
                 taxonomy[name] = taxInfo;
                 phyloTree->addSeqToTree(name, taxInfo);
-            }else {
-                m->mothurOut("[WARNING]: " + name + " is in your taxonomy file and not in your reference file, ignoring.\n");
-            }		
+            //}else {
+            //    m->mothurOut("[WARNING]: " + name + " is in your taxonomy file and not in your reference file, ignoring.\n");
+            //}
         }
 		
 		MPI_File_close(&inMPI);