X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=classify.cpp;h=2d01183479a504c798a18071df045f723643f850;hb=8a0b2fd6644dee848b262fcdea73b912a6054fed;hp=25aa2dd7b9f2f8a4f36030eebf0d3284f7d28b08;hpb=ba2b95b22ab8947d5583ca2c2da74557870b6861;p=mothur.git

diff --git a/classify.cpp b/classify.cpp
index 25aa2dd..2d01183 100644
--- a/classify.cpp
+++ b/classify.cpp
@@ -238,7 +238,7 @@ void Classify::generateDatabaseAndNames(string tfile, string tempFile, string me
 	}
 }
 /**************************************************************************************************/
-Classify::Classify() {		m = MothurOut::getInstance();	database = NULL;	}
+Classify::Classify() {		m = MothurOut::getInstance();	database = NULL;	flipped=false; }
 /**************************************************************************************************/
 
 int Classify::readTaxonomy(string file) {
@@ -296,7 +296,8 @@ int Classify::readTaxonomy(string file) {
 			delete buf4;
 
 			istringstream iss (tempBuf,istringstream::in);
-			iss >> name >> taxInfo;
+			iss >> name; m->gobble(iss);
+            iss >> taxInfo;
 			taxonomy[name] = taxInfo;
 			phyloTree->addSeqToTree(name, taxInfo);
 		}
@@ -309,8 +310,9 @@ int Classify::readTaxonomy(string file) {
 	
 		//read template seqs and save
 		while (!inTax.eof()) {
-			inTax >> name >> taxInfo;
-			
+			inTax >> name; m->gobble(inTax);
+            inTax >> taxInfo;
+            	
 			taxonomy[name] = taxInfo;
 			
 			phyloTree->addSeqToTree(name, taxInfo);