X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=classify.cpp;fp=classify.cpp;h=459c90f9ddd769628b0fc9061e7bd504a88b2900;hb=ea4f373c28543cd1002b0dd7dc6e55c526647d59;hp=ace89b9cbe9a4c0350ee14396b70340b1b7bc6b3;hpb=159fd324dfecacb6617669246d85c787ae67f630;p=mothur.git

diff --git a/classify.cpp b/classify.cpp
index ace89b9..459c90f 100644
--- a/classify.cpp
+++ b/classify.cpp
@@ -61,7 +61,8 @@ void Classify::generateDatabaseAndNames(string tfile, string tempFile, string me
 					names.push_back(temp.getName());
 					database->addSequence(temp);	
 				}
-				database->generateDB();
+				if ((method == "kmer") && (!shortcuts)) {;} //don't print
+                else {database->generateDB(); }
 			}else if ((method == "kmer") && (!needToGenerate)) {	
 				ifstream kmerFileTest(kmerDBName.c_str());
 				database->readKmerDB(kmerFileTest);	
@@ -200,7 +201,8 @@ void Classify::generateDatabaseAndNames(string tfile, string tempFile, string me
 				}
 				fastaFile.close();
 
-                database->generateDB(); 
+                if ((method == "kmer") && (!shortcuts)) {;} //don't print
+                else {database->generateDB(); } 
 				
 			}else if ((method == "kmer") && (!needToGenerate)) {	
 				ifstream kmerFileTest(kmerDBName.c_str());