X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=chopseqscommand.h;h=604906425997010d3cfcde2b41b9cdeb6b5a1ae7;hb=71c8b7190cf3a4dcedbab0273c938f6f868562bc;hp=b6af15466c3f7fde3062760335c12e11025e7393;hpb=11c115c802602be50e106aae56969e15d2c49a62;p=mothur.git

diff --git a/chopseqscommand.h b/chopseqscommand.h
index b6af154..6049064 100644
--- a/chopseqscommand.h
+++ b/chopseqscommand.h
@@ -25,7 +25,7 @@ class ChopSeqsCommand : public Command {
 		
 	private:
 		string fastafile, outputDir, keep;
-		bool abort;
+		bool abort, countGaps;
 		int numbases;
 		
 		string getChopped(Sequence);