X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=chopseqscommand.cpp;h=4e06201cd352104b5ee9c9d1c41764d16473003e;hb=2c97dd48b8e27ee0a6a86c7a082f4c504c3357c6;hp=68576cdb521efc994bedf2d3b2d40cc98a740b9c;hpb=0ca63a8165baa0afa459e644ebe140ba496d5ba0;p=mothur.git

diff --git a/chopseqscommand.cpp b/chopseqscommand.cpp
index 68576cd..4e06201 100644
--- a/chopseqscommand.cpp
+++ b/chopseqscommand.cpp
@@ -233,7 +233,7 @@ string ChopSeqsCommand::getChopped(Sequence seq) {
 					
 					for (int i = 0; i < temp.length(); i++) {
 						//eliminate N's
-						if (toupper(temp[i]) == 'N') { temp[i] == '.'; }
+						if (toupper(temp[i]) == 'N') { temp[i] = '.'; }
 						
 						numBasesCounted++; 
 						
@@ -255,7 +255,7 @@ string ChopSeqsCommand::getChopped(Sequence seq) {
 					
 					for (int i = (temp.length()-1); i >= 0; i--) {
 						//eliminate N's
-						if (toupper(temp[i]) == 'N') { temp[i] == '.'; }
+						if (toupper(temp[i]) == 'N') { temp[i] = '.'; }
 						
 						numBasesCounted++; 
 
@@ -283,7 +283,7 @@ string ChopSeqsCommand::getChopped(Sequence seq) {
 					for (int i = 0; i < temp.length(); i++) {
 						//eliminate N's
 						if (toupper(temp[i]) == 'N') { 
-							temp[i] == '.'; 
+							temp[i] = '.'; 
 							tempLength--;
 							if (tempLength < numbases) { stopSpot = 0; break; }
 						}
@@ -309,7 +309,7 @@ string ChopSeqsCommand::getChopped(Sequence seq) {
 					for (int i = (temp.length()-1); i >= 0; i--) {
 						//eliminate N's
 						if (toupper(temp[i]) == 'N') { 
-							temp[i] == '.'; 
+							temp[i] = '.'; 
 							tempLength--;
 							if (tempLength < numbases) { stopSpot = 0; break; }
 						}