X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=chopseqscommand.cpp;h=0e500d4982d372c95436b99e1ead81cb3c02a9c5;hb=62c36830aae6dd6151898ec6e07df59c8aed79fe;hp=8775d95abab9a4577aaad0f29feec2d15bc39694;hpb=ca9ac1d80c62f57270b0dcd49410ebe08a8aecd6;p=mothur.git

diff --git a/chopseqscommand.cpp b/chopseqscommand.cpp
index 8775d95..0e500d4 100644
--- a/chopseqscommand.cpp
+++ b/chopseqscommand.cpp
@@ -43,7 +43,7 @@ string ChopSeqsCommand::getHelpString(){
 		helpString += "The short parameter allows you to specify you want to keep sequences that are too short to chop, default=false.\n";
 		helpString += "For example, if you ran chop.seqs with numbases=200 and short=t, if a sequence had 100 bases mothur would keep the sequence rather than eliminate it.\n";
 		helpString += "Example chop.seqs(fasta=amazon.fasta, numbases=200, keep=front).\n";
-		helpString += "Note: No spaces between parameter labels (i.e. fasta), '=' and parameters (i.e.yourFasta).\n\n";
+		helpString += "Note: No spaces between parameter labels (i.e. fasta), '=' and parameters (i.e.yourFasta).\n";
 		return helpString;
 	}
 	catch(exception& e) {
@@ -73,6 +73,7 @@ ChopSeqsCommand::ChopSeqsCommand(string option)  {
 		
 		//allow user to run help
 		if(option == "help") { help(); abort = true; calledHelp = true; }
+		else if(option == "citation") { citation(); abort = true; calledHelp = true;}
 		
 		else {
 			vector<string> myArray = setParameters();