X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=chimerauchimecommand.h;h=6d9d001a142aaa6357cc81614c5f50af23f2bf76;hb=c27369bdcc3bebc4c449b9ae2f462d2a604a5503;hp=8861e19ffc4f2cca99fd50f38efd3d1f9798e2af;hpb=8159f34321e2c771638059b59a986caca9f3ab60;p=mothur.git

diff --git a/chimerauchimecommand.h b/chimerauchimecommand.h
index 8861e19..6d9d001 100644
--- a/chimerauchimecommand.h
+++ b/chimerauchimecommand.h
@@ -546,12 +546,13 @@ static DWORD WINAPI MyUchimeSeqsThreadFunction(LPVOID lpParam){
         ofstream out23;
         pDataArray->m->openOutputFile(outputFileName, out23);
         
+        int fcount = 0;
         while (!in23.eof()) {
             if (pDataArray->m->control_pressed) { break;  }
             
             Sequence seq(in23); pDataArray->m->gobble(in23);
             
-            if (seq.getName() != "") { seq.printSequence(out23); }
+            if (seq.getName() != "") { seq.printSequence(out23); fcount++; }
         }
         in23.close();
         out23.close();
@@ -821,12 +822,15 @@ static DWORD WINAPI MyUchimeSeqsThreadFunction(LPVOID lpParam){
 		in.close();
 		out.close();
 		
+        if (fcount != totalSeqs) { pDataArray->m->mothurOut("[ERROR]: process " + toString(pDataArray->threadID) + " only processed " + toString(pDataArray->count) + " of " + toString(pDataArray->end) + " sequences assigned to it, quitting. \n"); pDataArray->m->control_pressed = true; }
+        
 		if (pDataArray->m->control_pressed) { return 0; }
 		
 		pDataArray->m->mothurOutEndLine(); pDataArray->m->mothurOut("It took " + toString(time(NULL) - start) + " secs to check " + toString(totalSeqs) + " sequences.");	pDataArray->m->mothurOutEndLine();					
 	
 		pDataArray->count = totalSeqs;
 		pDataArray->numChimeras = numChimeras;
+        
 		return totalSeqs;
 		
 	}