X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=chimerauchimecommand.cpp;h=b1d996b0f8d971c0fca0124b29031f2c88e5fecb;hb=ee8403d4eb5760187d62b42a9cf4272de8fc0ec4;hp=be0421a73097bc47aa98934ba4ae59a320e02010;hpb=791f42d21a85f794529fd4c912dcc27d873c25e8;p=mothur.git

diff --git a/chimerauchimecommand.cpp b/chimerauchimecommand.cpp
index be0421a..b1d996b 100644
--- a/chimerauchimecommand.cpp
+++ b/chimerauchimecommand.cpp
@@ -994,7 +994,8 @@ int ChimeraUchimeCommand::driverGroups(SequenceParser& parser, string outputFNam
 			if (m->control_pressed) { return 0; }
 			
 			//remove file made for uchime
-			m->mothurRemove(filename);
+			if (!m->debug) {  m->mothurRemove(filename);  }
+            else { m->mothurOut("[DEBUG]: saving file: " + filename + ".\n"); }
 			
 			//append files
 			m->appendFiles((outputFName+groups[i]), outputFName); m->mothurRemove((outputFName+groups[i]));