X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=chimerauchimecommand.cpp;h=40b3f2683fbdc47770dd3a4292df5ae8cc6fbf75;hb=d0051dc9939d3477bd92b42c86bcd3eda743b955;hp=0846bbd9d1755f73e690e4bf11f72f0282fdfe25;hpb=7f0cae4f4853cc3f12bc751ee06ea31c7c97496e;p=mothur.git

diff --git a/chimerauchimecommand.cpp b/chimerauchimecommand.cpp
index 0846bbd..40b3f26 100644
--- a/chimerauchimecommand.cpp
+++ b/chimerauchimecommand.cpp
@@ -987,6 +987,11 @@ int ChimeraUchimeCommand::driverGroups(SequenceParser& parser, string outputFNam
 
 int ChimeraUchimeCommand::driver(string outputFName, string filename, string accnos, string alns, int& numChimeras){
 	try {
+		
+		outputFName = m->getFullPathName(outputFName);
+		filename = m->getFullPathName(filename);
+		alns = m->getFullPathName(alns);
+		
 		//to allow for spaces in the path
 		outputFName = "\"" + outputFName + "\"";
 		filename = "\"" + filename + "\"";