X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=chimeraslayercommand.h;h=e8afc61a5b32e5379d8c02a47a9a965eb3d1606d;hb=250e3b11b1c9c1e1ad458ab6c7e71ac2e67e11d9;hp=68e03b8f881930fd919fc36b2283cc4024d3a2b0;hpb=859e3a473a3e63e0060c49be70b80f9289253da2;p=mothur.git

diff --git a/chimeraslayercommand.h b/chimeraslayercommand.h
index 68e03b8..e8afc61 100644
--- a/chimeraslayercommand.h
+++ b/chimeraslayercommand.h
@@ -327,10 +327,10 @@ static DWORD WINAPI MySlayerThreadFunction(LPVOID lpParam){
 			
 			delete candidateSeq;
 			//report progress
-			if((pDataArray->count) % 100 == 0){	pDataArray->m->mothurOut("Processing sequence: " + toString(pDataArray->count)); pDataArray->m->mothurOutEndLine();		}
+			if((pDataArray->count) % 100 == 0){	pDataArray->m->mothurOutJustToScreen("Processing sequence: " + toString(pDataArray->count) +"\n"); 	}
 		}
 		//report progress
-		if((pDataArray->count) % 100 != 0){	pDataArray->m->mothurOut("Processing sequence: " + toString(pDataArray->count)); pDataArray->m->mothurOutEndLine();		}
+		if((pDataArray->count) % 100 != 0){	pDataArray->m->mothurOutJustToScreen("Processing sequence: " + toString(pDataArray->count)+"\n"); 		}
 		
 		pDataArray->numNoParents = chimera->getNumNoParents();
 		if (pDataArray->numNoParents == pDataArray->count) { 	pDataArray->m->mothurOut("[WARNING]: megablast returned 0 potential parents for all your sequences. This could be due to formatdb.exe not being setup properly, please check formatdb.log for errors.\n"); }
@@ -506,10 +506,10 @@ static DWORD WINAPI MySlayerGroupThreadFunction(LPVOID lpParam){
 				if (inFASTA.eof()) { break; }
 				
 				//report progress
-				if((numSeqs) % 100 == 0){	pDataArray->m->mothurOut("Processing sequence: " + toString(numSeqs)); pDataArray->m->mothurOutEndLine();		}
+				if((numSeqs) % 100 == 0){	pDataArray->m->mothurOutJustToScreen("Processing sequence: " + toString(numSeqs)+"\n"); pDataArray->m->mothurOutEndLine();		}
 			}
 			//report progress
-			if((numSeqs) % 100 != 0){	pDataArray->m->mothurOut("Processing sequence: " + toString(numSeqs)); pDataArray->m->mothurOutEndLine();		}
+			if((numSeqs) % 100 != 0){	pDataArray->m->mothurOutJustToScreen("Processing sequence: " + toString(numSeqs)+"\n"); 		}
 			
 			pDataArray->numNoParents = chimera->getNumNoParents();
 			if (pDataArray->numNoParents == numSeqs) { 	pDataArray->m->mothurOut("[WARNING]: megablast returned 0 potential parents for all your sequences. This could be due to formatdb.exe not being setup properly, please check formatdb.log for errors.\n"); }