X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=chimeraslayercommand.h;h=aa9b5e7102a324bce97095c2fce7d78f470ab3fc;hb=d9b668f68b99f92ecdc71dd8cd363cb4e27107f9;hp=c5ef88885d9b4c1e7275c998e8a2b35bbbbba99b;hpb=284fd95c611ccc3b1a7875c4dacfca06d1f50ed6;p=mothur.git

diff --git a/chimeraslayercommand.h b/chimeraslayercommand.h
index c5ef888..aa9b5e7 100644
--- a/chimeraslayercommand.h
+++ b/chimeraslayercommand.h
@@ -20,7 +20,12 @@
 class ChimeraSlayerCommand : public Command {
 public:
 	ChimeraSlayerCommand(string);
+	ChimeraSlayerCommand();
 	~ChimeraSlayerCommand();
+	vector<string> getRequiredParameters();
+	vector<string> getValidParameters();
+	vector<string> getRequiredFiles();
+	map<string, vector<string> > getOutputFiles() { return outputTypes; }
 	int execute();
 	void help();
 	
@@ -50,6 +55,7 @@ private:
 	Chimera* chimera;
 	
 	vector<string> outputNames;
+	map<string, vector<string> > outputTypes;
 	vector<string> fastaFileNames;
 	
 };