X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=chimeraslayercommand.h;h=0c6ebe2de76c957f2a3f9c072b9127efb002e5fb;hb=20071b183e619c122bf9f63b4bb42722507c4e4a;hp=6149ef5b7ded364733fa4480dc9386d2e7e92fb2;hpb=1a5c2356c1b955c6ec024b2baf9f46377ee7c72e;p=mothur.git

diff --git a/chimeraslayercommand.h b/chimeraslayercommand.h
index 6149ef5..0c6ebe2 100644
--- a/chimeraslayercommand.h
+++ b/chimeraslayercommand.h
@@ -70,7 +70,7 @@ private:
 	int driverMPI(int, int, MPI_File&, MPI_File&, MPI_File&, MPI_File&, vector<unsigned long long>&, string, map<string, int>&, bool);
 	#endif
 
-	bool abort, realign, trim, trimera, save, hasName, hasCount;
+	bool abort, realign, trim, trimera, save, hasName, hasCount, dups;
 	string fastafile, groupfile, templatefile, outputDir, search, namefile, countfile, blastlocation;
 	int processors, window, iters, increment, numwanted, ksize, match, mismatch, parents, minSimilarity, minCoverage, minBS, minSNP, numSeqs, templateSeqsLength;
 	float divR;