X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=chimeraslayercommand.h;fp=chimeraslayercommand.h;h=6149ef5b7ded364733fa4480dc9386d2e7e92fb2;hb=1a5c2356c1b955c6ec024b2baf9f46377ee7c72e;hp=4d53c5c048dafe1f969437a384ea93a160a83c04;hpb=79a7d3273749b08d4f9f8dfe350c964ff0c4351e;p=mothur.git

diff --git a/chimeraslayercommand.h b/chimeraslayercommand.h
index 4d53c5c..6149ef5 100644
--- a/chimeraslayercommand.h
+++ b/chimeraslayercommand.h
@@ -28,8 +28,9 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "chimera.slayer";		}
 	string getCommandCategory()		{ return "Sequence Processing"; }
-	string getOutputFileNameTag(string, string);
+	
 	string getHelpString();	
+    string getOutputPattern(string);	
 	string getCitation() { return "Haas BJ, Gevers D, Earl A, Feldgarden M, Ward DV, Giannokous G, Ciulla D, Tabbaa D, Highlander SK, Sodergren E, Methe B, Desantis TZ, Petrosino JF, Knight R, Birren BW (2011). Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons. Genome Res  21:494.\nhttp://www.mothur.org/wiki/Chimera.slayer"; }
 	string getDescription()		{ return "detect chimeric sequences"; }