X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=chimeraslayercommand.cpp;h=a1be2359c1516aa26395a2ba00c6101fb3a996f3;hb=66d24c0ac3c96d3e1bce9217032ece55dd3609eb;hp=576fee94250f780685bbc57cd20bf0478241f74e;hpb=3504e4e2feeb05aabb0c79aa42cb696522030924;p=mothur.git

diff --git a/chimeraslayercommand.cpp b/chimeraslayercommand.cpp
index 576fee9..a1be235 100644
--- a/chimeraslayercommand.cpp
+++ b/chimeraslayercommand.cpp
@@ -1497,6 +1497,9 @@ int ChimeraSlayerCommand::createProcessesGroups(string outputFName, string accno
 		
 		//Close all thread handles and free memory allocations.
 		for(int i=0; i < pDataArray.size(); i++){
+            if (pDataArray[i]->count != pDataArray[i]->end) {
+                m->mothurOut("[ERROR]: process " + toString(i) + " only processed " + toString(pDataArray[i]->count) + " of " + toString(pDataArray[i]->end) + " sequences assigned to it, quitting. \n"); m->control_pressed = true; 
+            }
 			num += pDataArray[i]->count;
 			CloseHandle(hThreadArray[i]);
 			delete pDataArray[i];