X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=chimeraslayercommand.cpp;h=004cfb0c9e1124cd5ad78c542c6df3815bd4541d;hb=cd985cf388dcc4c7de8251339206aec5f7e12f1e;hp=c41e026497191d8218f90ef8ddb5754aa92cfee0;hpb=725a3d4ff2442c79bfde0a75ed3e0904edcf03b7;p=mothur.git

diff --git a/chimeraslayercommand.cpp b/chimeraslayercommand.cpp
index c41e026..004cfb0 100644
--- a/chimeraslayercommand.cpp
+++ b/chimeraslayercommand.cpp
@@ -292,7 +292,6 @@ int ChimeraSlayerCommand::execute(){
 				int startIndex =  pid * numSeqsPerProcessor;
 				if(pid == (processors - 1)){	numSeqsPerProcessor = numSeqs - pid * numSeqsPerProcessor; 	}
 				
-				
 				//align your part
 				driverMPI(startIndex, numSeqsPerProcessor, inMPI, outMPI, outMPIAccnos, MPIPos);
 				
@@ -330,7 +329,7 @@ int ChimeraSlayerCommand::execute(){
 			if(processors == 1){
 				ifstream inFASTA;
 				openInputFile(fastafile, inFASTA);
-				numSeqs=count(istreambuf_iterator<char>(inFASTA),istreambuf_iterator<char>(), '>');
+				getNumSeqs(inFASTA, numSeqs);
 				inFASTA.close();
 				
 				lines.push_back(new linePair(0, numSeqs));
@@ -377,7 +376,6 @@ int ChimeraSlayerCommand::execute(){
 					lines.push_back(new linePair(startPos, numSeqsPerProcessor));
 				}
 				
-				
 				createProcesses(outputFileName, fastafile, accnosFileName); 
 			
 				rename((outputFileName + toString(processIDS[0]) + ".temp").c_str(), outputFileName.c_str());
@@ -419,7 +417,7 @@ int ChimeraSlayerCommand::execute(){
 		#else
 			ifstream inFASTA;
 			openInputFile(fastafile, inFASTA);
-			numSeqs=count(istreambuf_iterator<char>(inFASTA),istreambuf_iterator<char>(), '>');
+			getNumSeqs(inFASTA, numSeqs);
 			inFASTA.close();
 			lines.push_back(new linePair(0, numSeqs));