X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=chimeraseqscommand.h;h=afbc2592a389f2faa971452d2fa12e3be4fa9680;hb=b447f829850ae054e42560c7c3ed71b14f3f40bb;hp=56477a11c5249b88ded4acd2c87ac547e8bc9754;hpb=9c23307c583d4e8595f75278c13e708788f2f058;p=mothur.git

diff --git a/chimeraseqscommand.h b/chimeraseqscommand.h
index 56477a1..afbc259 100644
--- a/chimeraseqscommand.h
+++ b/chimeraseqscommand.h
@@ -12,8 +12,6 @@
 
 #include "mothur.h"
 #include "command.hpp"
-#include "chimera.h"
-
 
 /***********************************************************/
 
@@ -27,26 +25,6 @@ public:
 		
 private:
 
-	struct linePair {
-		int start;
-		int numSeqs;
-		linePair(long int i, int j) : start(i), numSeqs(j) {}
-	};
-	vector<int> processIDS;   //processid
-	vector<linePair*> lines;
-	
-	int driver(linePair*, string, string, string);
-	void createProcesses(string, string, string);
-	void appendOutputFiles(string, string); 
-
-	bool abort;
-	string method, fastafile, templatefile, consfile, quanfile, maskfile, namefile, outputDir, search;
-	bool filter, correction, svg, printAll, realign;
-	int processors, midpoint, averageLeft, averageRight, window, iters, increment, numwanted, ksize, match, mismatch, parents, minSimilarity, minCoverage, minBS, minSNP, numSeqs, templateSeqsLength;
-	float divR;
-	Chimera* chimera;
-	
-	
 };
 
 /***********************************************************/