X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=chimeraseqscommand.h;h=afbc2592a389f2faa971452d2fa12e3be4fa9680;hb=8ef6687c1f586285d01c000cc5e359bf9c07c717;hp=455ac926a494d162839444a5e192f9a030556d07;hpb=7e354c9abb09ea3cf5b500a16cc7f6dd79ccb6f5;p=mothur.git

diff --git a/chimeraseqscommand.h b/chimeraseqscommand.h
index 455ac92..afbc259 100644
--- a/chimeraseqscommand.h
+++ b/chimeraseqscommand.h
@@ -12,10 +12,6 @@
 
 #include "mothur.h"
 #include "command.hpp"
-#include "filterseqscommand.h"
-#include "sequence.hpp"
-
-
 
 /***********************************************************/
 
@@ -26,28 +22,8 @@ public:
 	int execute();
 	void help();
 	
+		
 private:
-	//Dist* distCalculator;
-	
-	struct Preference {
-		string leftParent;
-		string rightParent;
-		float score;
-
-	};
-
-
-	bool abort;
-	string method, fastafile;
-	bool filter, correction;
-	int processors, midpoint;
-	FilterSeqsCommand* filterSeqs;
-	vector<Sequence> seqs;
-	vector<Preference> pref;
-	
-	int findAverageMidPoint();
-	void readSeqs();
-	
 
 };