X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=chimeraseqscommand.h;h=46e2bc88300c7a3e89f8fb985100d6edd50129a1;hb=315e38cf393c82be238da5b32574f225a020d25c;hp=865a84d378d0429a77e833aa5b1db7eca097a83f;hpb=05a0195e07c42c996592ee1c8abb63adedb7f493;p=mothur.git

diff --git a/chimeraseqscommand.h b/chimeraseqscommand.h
index 865a84d..46e2bc8 100644
--- a/chimeraseqscommand.h
+++ b/chimeraseqscommand.h
@@ -28,8 +28,8 @@ public:
 private:
 	
 	bool abort;
-	string method, fastafile, templatefile, consfile, quanfile, maskfile, namefile;
-	bool filter, correction, svg;
+	string method, fastafile, templatefile, consfile, quanfile, maskfile, namefile, outputDir;
+	bool filter, correction, svg, printAll;
 	int processors, midpoint, averageLeft, averageRight, window, iters, increment, numwanted, ksize, match, mismatch, parents, minSimilarity;
 	float divR;
 	Chimera* chimera;