X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=chimerarealigner.h;h=7ad741800e3b571f4c3b63dd8349bcf2e9e21e47;hb=546daa95f30e1a012e1bcb7f134595273848d917;hp=dec41ef716eb9bcd35864bb461ade028786b2133;hpb=e73e95146e342e952ff96efbd67677bec2120e83;p=mothur.git

diff --git a/chimerarealigner.h b/chimerarealigner.h
index dec41ef..7ad7418 100644
--- a/chimerarealigner.h
+++ b/chimerarealigner.h
@@ -18,17 +18,15 @@
 class ChimeraReAligner  {
 	
 	public:
-		ChimeraReAligner(vector<Sequence*>, int, int);	 
+		ChimeraReAligner();	 
 		~ChimeraReAligner();
 		
 		void reAlign(Sequence*, vector<results>);
 				
 	private:
 		Sequence* querySeq;
-		vector<Sequence*> templateSeqs;
-		int match, misMatch;
 		
-		Sequence* getSequence(string);  //find sequence from name
+		//Sequence* getSequence(string);  //find sequence from name
 		MothurOut* m;
 };
 /***********************************************************/