X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=chimerapintailcommand.h;fp=chimerapintailcommand.h;h=fa195e7253e870f2a38b8e72ca90a1a6875e4652;hb=1a5c2356c1b955c6ec024b2baf9f46377ee7c72e;hp=1f30b7d32ef8e826fa0479ff10dcd529982c2b00;hpb=79a7d3273749b08d4f9f8dfe350c964ff0c4351e;p=mothur.git

diff --git a/chimerapintailcommand.h b/chimerapintailcommand.h
index 1f30b7d..fa195e7 100644
--- a/chimerapintailcommand.h
+++ b/chimerapintailcommand.h
@@ -28,8 +28,9 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "chimera.pintail";		}
 	string getCommandCategory()		{ return "Sequence Processing"; }
-	string getOutputFileNameTag(string, string);
+	
 	string getHelpString();	
+    string getOutputPattern(string);	
 	string getCitation() { return "Ashelford KE, Chuzhanova NA, Fry JC, Jones AJ, Weightman AJ (2005). At least 1 in 20 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies. Appl Environ Microbiol 71: 7724-36. \nAshelford KE, Chuzhanova NA, Fry JC, Jones AJ, Weightman AJ (2006). New screening software shows that most recent large 16S rRNA gene clone libraries contain chimeras. Appl Environ Microbiol 72: 5734-41. \nhttp://www.mothur.org/wiki/Chimera.pintail"; }
 	string getDescription()		{ return "detect chimeric sequences"; }